JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
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Mar 9, 2026 - JavaScript
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protein-annotation
Here are 17 public repositories matching this topic...
ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model (Connecting text and protein)
protein-function-prediction protein-annotation protein-alignment contrastive-learning protein-language-model sequence-structure protein-clip protein-text protein-text-search protein-natural-language-search protein-text-retrieval protein-text-alignment text-protein-search
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May 15, 2026 - Python
A software package for computing features of peptides and proteins
bioinformatics machine-learning-algorithms protein-annotation amino-acid-composition function-annotation pssm-profile
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May 8, 2026 - Python
Exploring Evolution-aware & free protein language models as protein function predictors
benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding
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Sep 28, 2024 - Python
A package to annotate protein sequences
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Feb 23, 2025 - Python
[ICLR 2026] Lost in Tokenization: Context as the Key to Unlocking Biomolecular Understanding in Scientific LLMs
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Nov 25, 2025 - Python
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
genetics proteins gene-annotation genes pathogenicity variant-annotations protein-domains pathogenic-variants protein-annotation genetic-tolerance domain-homology variant-interpretation
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Feb 11, 2026 - Python
Tool for similarity analysis of protein function annotations.
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Mar 2, 2022 - Python
🧬 SeqStudio: Generative reasoning system for protein functional annotation
bioinformatics uniprot protein-function-prediction protein-annotation protein-function large-language-model
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Apr 21, 2026 - Python
An ensemble method for predicting proteins secreted via exosomes
bioinformatics machine-learning-algorithms protein-annotation subcellular-location-prediction exosomal-proteins
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May 8, 2026 - Python
Novel method for specific metal-binding sites prediction with known 3D structure.
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Jan 22, 2021 - Python
an assortment of bioinformatics inspired Python scripts
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Apr 15, 2017 - Python
React webapp to submit and retrieve jobs from Deciphon – a protein prediction tool for nanopore reads
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Nov 11, 2024 - JavaScript
First application of multimodal biological reasoning + structural search to the JCVI-syn3A dark proteome. 132/132 proteins processed; 131 with category assignments; 1 computationally intractable. Grounds the next generation of syn3A whole-cell models.
bioinformatics synthetic-biology computational-biology protein-annotation interpro minimal-cell bioreason mycoplasma
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Apr 6, 2026 - Jupyter Notebook
Evidence-aware protein annotation workflow using BLAST, HMMER, SQLite, and Flask
html flask workflow bioinformatics pipeline sqlite computational-biology pyhton blast hmmer functional-annotation pfam sequence-analysis protein-annotation enzmye-annotation
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Apr 3, 2026 - HTML
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